FROM ubuntu:14.04
MAINTAINER Alex Marginean "alexandru.marginean.13@ucl.ac.uk"

#install the requirements for muScalpel
RUN apt-get update && apt-get install -y git wget gcc-4.8 g++-4.8 gfortran-4.8 autoconf automake libtool flex bison vim cflow make check pkg-config libglib2.0-dev libgcrypt20

RUN cp /usr/bin/gcc-4.8 /usr/bin/gcc 
RUN cp /usr/bin/g++-4.8 /usr/bin/g++
RUN cp /usr/bin/gfortran-4.8 /usr/bin/gfortran

#build the folder structure
RUN mkdir /home/muScalpelExperiments
RUN cd /home/muScalpelExperiments && wget http://crest.cs.ucl.ac.uk/autotransplantation/downloads/scripts/RUN_ALL.tar.gz && tar -xzvf RUN_ALL.tar.gz && cd AllScripts && ./runAll.sh